Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTKKRITFGLLVLMVCVILFVLYVQLRNKDSIPVQSSAIHPEEDRIFFIYSNPFIKESVLLSTSTGERFNRRTFKVADVPYIQTKSYASTDLVLLAEHEPFYYTLEKDVIKEHPLSDPFAFWYEGKDVTIEAYNVDTTGNEIHINDRKTKKEYTLTLPPLVTMGASDENFIYIIQSM-------SIYVIDRKTEEMIETLS-------LASYADQFADSEEFIVASS--DHKLTVIEKGTWKT-TYIAYPEDLEYADTVYYDKESGSFYVAYEDKEGGANLLEYGEDF-SI-HTYSLKFP------YMEAKFKGNLLYIVAQEEHKKGIGGYVGVFDIHSKEMLYQFDLPEEQVKVQDFVVVDNK
3DSM Chain:A ((2-171))------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT---SPRYIHFLSD-EKAYVTQIWD---YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDTETDKVVDELTIG---------------


General information:
TITO was launched using:
RESULT:

Template: 3DSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 718 -107035 -149.07 -738.17
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.57

3D Compatibility (PKB) : -149.07
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.452

(partial model without unconserved sides chains):
PDB file : Tito_3DSM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3DSM-query.scw
PDB file : Tito_Scwrl_3DSM.pdb: