Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MKVPKTMLLSTAAGLLLSLTATSVSAHYVNEEHHFKVTAHTETDPVASGDDAADDPAIWVHEKHPEKSKLITT-NKKSGLVVYDLDGKQLHSYEFGKLNNVDLRYDFPLNGEKIDIAAASNRSE---GKNTIEVYAIDGDKGKLKSITDPNHPISTNISEVYGFSLYHSQKTGAFYALVTGKQGEFEQYEIVDGGKGYVTGKKVREFKLNSQTEGLVADDEYGNLYIAEEDEAIWKFNAEPGGGS-----KGQVVDRATGDHLTADIEGLTIYYAPNGKGYLMASSQGNNSYAMYERQGKNR-YVANFEITDGEK--IDGTSDTDGIDVL---GFGLGPKYPYGIFVAQDGENIDNGQAVNQNFKIVSWEQIAQHLGEMPDLH-KQVNPRKLKDRSDG
2VDU Chain:B ((2-436))SVIHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWS-------DDFPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQE--PILGHVSMLTDVHLIKD-SDGHQFIITSDRD---EHIKISHYPQCFIVDKWL--FGHKHFVSSICCGKDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN--ENSFVVNNEKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYNVSSL


General information:
TITO was launched using:
RESULT:

Template: 2VDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2047 121908 59.55 342.44
target 2D structure prediction score : 0.71
Monomeric hydrophicity matching model chain B : 0.69

3D Compatibility (PKB) : 59.55
2D Compatibility (Sec. Struct. Predict.) : 0.71
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.316

(partial model without unconserved sides chains):
PDB file : Tito_2VDU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2VDU-query.scw
PDB file : Tito_Scwrl_2VDU.pdb: