Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAISCSPRPRYASRMPVLSKTVEVTADAASIMAIVADIERYPEWNEGVKGAWVLARYDDGRPSQVRLDTAVQGIEGTYIHAVY-YPGENQIQTVMQ---QGELFAKQEQLFSVVATGAASLLTVDMDVQVTMPV---PEPMVKMLLNNVLEHLAENLKQRAEQLAAS
2NS9 Chain:A ((7-156))
----------GVWGLKVRYEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVEV-EDGSF--TIELRLSLGPLRGDARVRASFEDLEKPSKATVKGSGRGAGSTL-DFTLRFAVEPSGGGSRVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGE----
General information:
TITO was launched using:
RESULT:
Template:
2NS9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49662 for 1012 contacts (-49.1/contact) +
2D Compatibility (PS) -15711 + (NN) -5562 + (LL) 1112
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -73873.0 ( -73.00 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_2NS9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NS9-query.scw
PDB file :
Tito_Scwrl_2NS9.pdb
: