Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTAPTGTSATTTRPWTPRIATQLSVLACAAFIYVTAEILPVGALSAIA-RNLRVSVVLVGTLLSWYALVAAVTTVPLVRWTAHWPRRRALVVSLVCLTVSQLVSALAPNFAVLAAGRVLCAVTHGLLWAVIAPIATRLVPPSHAGRATTSIYIGTSLALVVGSPLTAAMSLMWGWRLAAVCVTGAAAAVALAARLALPEMVLRADQL--EHV-GRRARHHRNPRLVKVSVLTMIAVTGHFVSYTYIVVIIRDVVGVRGPNLA---WLLAAYGVAGLVSVPLVARPLDRWPKGAVIVGMTGLTAAFTLLTALAFGERHTAATALLGTGAIVLWGALATAVSPMLQSAAMRSGG-DDPDGASGLYVTAFQIGIMAGALLGGLLYERS-LAMMLTASAGLMGVALFGMTVSQHLFENPTLSPGDG |
| 3WDO Chain:A ((14-384)) | ----------------------TWGLGTVFSLRMLGMFMVLPVLTTYGMALQGASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIWGIILGRALQGSGA--IAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLNFGIMCLHMLLMSTFVALPGQLADA-GFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRKMKQ-VFVFCVGLIVVAEIV-LW--NAQTQF-W---QLVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQGVFLAGAMLAAVWLAV------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -326032 for 3158 contacts (-103.2/contact) +
2D Compatibility (PS) -37833 + (NN) -13146 + (LL) 2572
1D Compatibility (HY) -13200 + (ID) 2750
Total energy: -390389.0 ( -123.62 by residue)
QMean score : 0.239
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