Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQA--QQIEWSKVHLFWGDERYVPEDDDERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGA-DPVSVPAAGAVGR-QNTLWLLDRDAAAKLPS
1Y89 Chain:A ((1-237))
-MINHKIFPTADAVVKSLADDMLAYSQ----QGQPVHISLSGGSTPKMLFKLLASQPYANDIQWKNLHFWWGDERCVAPDDAESNYGEANALLFSKINMPAQNIHRILGEN-----EPQAEAERFAQAMAHVIPTENGTPVFDWILLGVGADGHTASLFPGQTDYADA-NLSV-VASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAEQLPYPAAKIHSTSGVTEWYLDSDAAAKI--
General information:
TITO was launched using:
RESULT:
Template:
1Y89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111857 for 1935 contacts (-57.8/contact) +
2D Compatibility (PS) -25762 + (NN) -20631 + (LL) 400
1D Compatibility (HY) -14000 + (ID) 3550
Total energy: -175400.0 ( -90.65 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1Y89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y89-query.scw
PDB file :
Tito_Scwrl_1Y89.pdb
: