Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFPGSVIRKLSHSEEVFAQ--------YEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDG---TA---ATNGSPSGNAELRLDQSVSL-LHLQLI-LREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEA--VLAQRGIRKQGLSGAERFMSVMYAYEIPATETPAVLAHPGLPQAVPVTRLWLSKQQTSDLMAFGREHR-LSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGP--NTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYGWIME |
| 4HVM Chain:A ((12-365)) | -----GLRRASFLQRGAWRWLREAPPAAAFAA-RGLLGSGRIDDDRLAAAADEVLDAFPLLRVNFVDDDG-LWMRTRENADALVRSDLRGHPDPQARCVELL-RAD-RDRPTDPERDPLVRLHLVRLSETDVVLGVVAHQMLLDARSRYMVLGAVWQAYYGRFRP-----AQYRDFAEVADFHPLDRETVRVARHRWWSRRLPALPVR----G--------------PPETSRLRVPGSRWQALTEP-----NGSLAMAALTAWWLWTQ-------DSLYLSTEVDLRDHL---QLGSVVGPLTDRVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH--------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139217 for 1855 contacts (-75.0/contact) +
2D Compatibility (PS) -27749 + (NN) -1372 + (LL) 5856
1D Compatibility (HY) -400 + (ID) 2050
Total energy: -164932.0 ( -88.91 by residue)
QMean score : 0.230
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