Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPNPAELLPRMASDLRAHLAERGIERPRFVGIHTGGIWVAEALLREL----GNQEPLGTLDVSFYRDDFTQNGLHPQVRPSALPFEIDGQHLVLVDDVLMSGRTIRAALNELFDYGRPASVTLVCLLDLNARELPIRPDVVGQTLSLGRDERVKLVGPAPLALERKVLSSAS
2IGB Chain:B ((28-159))
-----------------------KGIDGCVLVGIKTRGIYLARRLAERIEQIEGASVPVGELDITLYRD----DDHEPLVKGTNVPFPVTERNVILVDDVLFTGRTVRAAMDAVMDLGRPARIQLAVLVDRGHRELPIRADFVGKNVPTSRSELIVVELSEVDGIDQVSIHEK-
General information:
TITO was launched using:
RESULT:
Template:
2IGB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78944 for 866 contacts (-91.2/contact) +
2D Compatibility (PS) -13089 + (NN) -4460 + (LL) 2020
1D Compatibility (HY) -14000 + (ID) 2650
Total energy: -111123.0 ( -128.32 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_2IGB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IGB-query.scw
PDB file :
Tito_Scwrl_2IGB.pdb
: