Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQAFTVVIPARYASTRLPGKPLQDIAGQPMIQRVWNQARKSAASRVVVATDDERILAACQGFGAEALLTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIATLAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWARDAFARDRDSLPEGVPYRRHIGIYAYRVGFLADFVAWGPCWLENAESLEQLRALWHGVRIHVADARENMLPGVDTPEDLERVRRVLGG
2Y6P Chain:B ((5-231))
------VIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKTG-ERVILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDLDVD---LIINYQGDEPFVYEEDIKLIFRELEKG--ERVVTLARKDKE--AYERPEDVKVVLDREGYALYFSRSPIPY----FRKNDTFYP-----LKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVL-ITENYYHGVDTEEDLKIVEEKL--
General information:
TITO was launched using:
RESULT:
Template:
2Y6P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140562 for 1827 contacts (-76.9/contact) +
2D Compatibility (PS) -24373 + (NN) -11154 + (LL) 816
1D Compatibility (HY) -20400 + (ID) 4650
Total energy: -200323.0 ( -109.65 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_2Y6P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y6P-query.scw
PDB file :
Tito_Scwrl_2Y6P.pdb
: