Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MALAKRIIPCLDV---DNGRVV--KGVKFENIRDAGDPVEIARRYDEQGADEITFLDITASVDG--RDT-TLHTVERMASQVFIPLTVGGGVRSVQDIRN-----------LLNAGADKVSINTAAVFNPEFVGEAADR-------------FGSQCIVVAIDAKKVSAPGEA-------------PRWEIFT------HGGRKPTGLDAVLWAKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISEAVNVPVIASGGVGNLEHLAAGILEGKADAVLAASIFHFGEYTVPEAKAYLASRGIVVR |
1OX5 Chain:B ((240-551)) | --LTRRIIACLDVRTNDQGDLVVTK---------LGKPVQLAQKYYQQGADEVTFLNIT----CPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKVR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OX5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23983 for 1920 contacts (-12.5/contact) +
2D Compatibility (PS) -26229 + (NN) -7123 + (LL) 1052
1D Compatibility (HY) 8000 + (ID) 850
Total energy: -49133.0 ( -25.59 by residue)
QMean score : 0.214
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