Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMNKALELFRKDMASNYKELGFQG
1M6M Chain:B ((1-153))
-GLSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGNTNLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPGDFGADAQGAMSKALELFRNDMAAKYKELGFQG
General information:
TITO was launched using:
RESULT:
Template:
1M6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67103 for 1136 contacts (-59.1/contact) +
2D Compatibility (PS) -16642 + (NN) -10883 + (LL) 208
1D Compatibility (HY) -17200 + (ID) 7100
Total energy: -118720.0 ( -104.51 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_1M6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M6M-query.scw
PDB file :
Tito_Scwrl_1M6M.pdb
: