Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
2WM9 Chain:B ((3-179))
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL--------------
General information:
TITO was launched using:
RESULT:
Template:
2WM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129339 for 1420 contacts (-91.1/contact) +
2D Compatibility (PS) -18985 + (NN) -8701 + (LL) 688
1D Compatibility (HY) -26400 + (ID) 8850
Total energy: -191587.0 ( -134.92 by residue)
QMean score : 0.722
(partial model without unconserved sides chains):
PDB file :
Tito_2WM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WM9-query.scw
PDB file :
Tito_Scwrl_2WM9.pdb
: