Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4LV6 Chain:B ((2-168))
MTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4LV6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109682 for 1337 contacts (-82.0/contact) +
2D Compatibility (PS) -18511 + (NN) -7070 + (LL) 1872
1D Compatibility (HY) -21200 + (ID) 7900
Total energy: -162491.0 ( -121.53 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_4LV6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LV6-query.scw
PDB file :
Tito_Scwrl_4LV6.pdb
: