Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
4LYF Chain:B ((2-168))
MTEYKLVVVGACGVGKSALTIQLIQNHFV---------SYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
4LYF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113636 for 1279 contacts (-88.8/contact) +
2D Compatibility (PS) -17536 + (NN) -8100 + (LL) 1016
1D Compatibility (HY) -20000 + (ID) 7050
Total energy: -165306.0 ( -129.25 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_4LYF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LYF-query.scw
PDB file :
Tito_Scwrl_4LYF.pdb
: