Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALEKSLVRLLLLVLILLVLGWVQPSLGKESRAKKFQRQHMDSDSSPSSSSTYCNQMMRRRNMTQGRCKPVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSNSSMHITDCRLTNGSRYPNCAYRTSPKERHIIVACEGSPYVPVHFDASVEDST
3DJV Chain:B ((1-124))
----------------------------KESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV----
General information:
TITO was launched using:
RESULT:
Template:
3DJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33315 for 807 contacts (-41.3/contact) +
2D Compatibility (PS) -13948 + (NN) -10978 + (LL) 3316
1D Compatibility (HY) -11600 + (ID) 4500
Total energy: -71025.0 ( -88.01 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_3DJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJV-query.scw
PDB file :
Tito_Scwrl_3DJV.pdb
: