Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
2CD2 Chain:A ((1-206))
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
General information:
TITO was launched using:
RESULT:
Template:
2CD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153113 for 1550 contacts (-98.8/contact) +
2D Compatibility (PS) -22598 + (NN) -10736 + (LL) 0
1D Compatibility (HY) -31200 + (ID) 10300
Total energy: -227947.0 ( -147.06 by residue)
QMean score : 0.762
(partial model without unconserved sides chains):
PDB file :
Tito_2CD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CD2-query.scw
PDB file :
Tito_Scwrl_2CD2.pdb
: