Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIKCVAFD
4GA9 Chain:B ((1-134))
-ACGLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPDGHEFKFPNRLNMEAINYMAADGDFKVKCVAFE
General information:
TITO was launched using:
RESULT:
Template:
4GA9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71988 for 1002 contacts (-71.8/contact) +
2D Compatibility (PS) -14144 + (NN) -2735 + (LL) 208
1D Compatibility (HY) -16800 + (ID) 6000
Total energy: -111459.0 ( -111.24 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_4GA9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GA9-query.scw
PDB file :
Tito_Scwrl_4GA9.pdb
: