Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYAADE
1CDE Chain:A ((1-209))
MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYA---
General information:
TITO was launched using:
RESULT:
Template:
1CDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162941 for 1696 contacts (-96.1/contact) +
2D Compatibility (PS) -23513 + (NN) -13501 + (LL) 172
1D Compatibility (HY) -28000 + (ID) 10450
Total energy: -238233.0 ( -140.47 by residue)
QMean score : 0.883
(partial model without unconserved sides chains):
PDB file :
Tito_1CDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CDE-query.scw
PDB file :
Tito_Scwrl_1CDE.pdb
: