Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKALDLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
1JYS Chain:B ((11-240))
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQ----SFDEFLAVAAKQSSLMVESLVQKLA--
General information:
TITO was launched using:
RESULT:
Template:
1JYS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185045 for 1973 contacts (-93.8/contact) +
2D Compatibility (PS) -24867 + (NN) -19139 + (LL) 240
1D Compatibility (HY) -31600 + (ID) 10250
Total energy: -270661.0 ( -137.18 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_1JYS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JYS-query.scw
PDB file :
Tito_Scwrl_1JYS.pdb
: