Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAM-----TARRRGVVINPVLET-SEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
3U04 Chain:A ((3-185))
MSVLSIVTVPDKRLSLCSEEVEK-----VDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPEE---IEGYELYGGPYCIINPKIVDISQ------EKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKKKE-------------------
General information:
TITO was launched using:
RESULT:
Template:
3U04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85454 for 1305 contacts (-65.5/contact) +
2D Compatibility (PS) -17672 + (NN) -3485 + (LL) 460
1D Compatibility (HY) -13600 + (ID) 2700
Total energy: -122451.0 ( -93.83 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_3U04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U04-query.scw
PDB file :
Tito_Scwrl_3U04.pdb
: