Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATVNTDATDKDISKFKVTF---TLVVSGIECITGILGSGFITAIYGAEWARGKTLPTGDRIMLMLSFSRLLLQIWMMLENIFSLL----FRIVYNQN--SVYILFKVITVFLNHSNLWFAAWLKVF------YCLRIANFNHPLFFLMKRKIIVLMPWLLRLSVLVSLSFSFPLSRDVFNVYVNSSIPIPSSNS-----TEKKYFSETNMVNLVFFYNMGIFVPLIMFIL---AAT------LLILSLKRHTLHMGSNATGSRDPSMKAHIGAIKA-------TSYFLILYIFNAIALFLSTSNIFDTYSSWNILCKIIMAAYPAGHSVQLILGNPGLRRAWKRFQH----QVPLYLKGQTL---------- |
| 4P5F Chain:A ((8-374)) | -LTPTEAAVLRELRLHRPQLPLDTLLFTDP----NKDPDDVVTYTIAKQLQADGFLRLTD-VVVTLGDADMRSQRAQLAKGVFDRLALPDVRVARGQDYPMTSTQAREHSKFLAEGAALRAAPDAVHTDGVRAMCERLATSPHKLGMVVIAGMTDASALLAEAGDLVREK--------VASITIMGGIDPARDADGLVQPDTRAYNNATDIHAARALYRRAQQLGIPLRILTKEAAYKAAVPPAFYEGIARNGHPVGEYLRDVQKNALKGLWEGIQANLIPGLDTAWFFRTFVAGA----LSFDAIWPQVTKLNLYDPLTLLAALPGTARLLFQPTPMHREGASPVEHVGHAEVVRPEKARLLLSALAKAALV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P5F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -314176 for 2502 contacts (-125.6/contact) +
2D Compatibility (PS) -31657 + (NN) -4029 + (LL) 1648
1D Compatibility (HY) -2000 + (ID) 2800
Total energy: -353014.0 ( -141.09 by residue)
QMean score : 0.172
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