Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSPWAVKKINPICNDHYRSVYQKRLMDEAKILKSLHHPNIVGYRAFTEANDGSLCLAMEYGGEKSLNDLIEERYKASQDPFPAAIILKVALNMARGLKYLHQEKKLLHGDIKSSNVVIKGDFETIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEAVE--ENGVITDKADIFAFGLTLWEMMTLSIPHINLSNDDDDEDKTFDESDFDDEAYYAALGTRPP-INM--EELDESYQKVIELFSVCTNEDPKDRPSAAHIVEALETDV |
| 3OMV Chain:A ((29-297)) | ----------------------YYWEIEASEVMLSTRIGSGSFGTVYKGKW------HGDVAVKILKVV---DPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT--KDNLAIVTQWCEGSSLYKHLHVQ----ETKFQMFQLIDIARQTAQGMDYLHA-KNIIHRDMKSNNIFLHEG-LTVKIGDFGLATV-------------PTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-------------RDQIIFMVGRGYASPDLSKLYKNCPKAMK---RLVADCVKKVKEERPLFPQILSSIELLQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91121 for 1961 contacts (-46.5/contact) +
2D Compatibility (PS) -27146 + (NN) -18795 + (LL) 2672
1D Compatibility (HY) -13600 + (ID) 2850
Total energy: -150840.0 ( -76.92 by residue)
QMean score : 0.461
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