Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGDVMSAIPPCMSYATGQ----ASS-----PSAGCCSGVRTLNGKASTSADRQAACRCLKNLAGSFN---G---------I---------SMGNAANIPGKCGVSVSFPINNNVNCNNLH
1B1U Chain:A ((15-109))
--------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36522 for 416 contacts (-87.8/contact) +
2D Compatibility (PS) -6240 + (NN) 1788 + (LL) 744
1D Compatibility (HY) -4000 + (ID) 450
Total energy: -44680.0 ( -107.40 by residue)
QMean score : 0.281
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: