Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQCGQVTQLMAPCMPYLSG----APGMTP----YGICCNSLGVLNQLAASTADRVAACNCVKAAASGGF--------------PA--V----DFSRAAALPAACGLAINFAVTPNMDCNQVTDEP
1B1U Chain:A ((15-109))
--------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH---------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55071 for 412 contacts (-133.7/contact) +
2D Compatibility (PS) -6230 + (NN) 2142 + (LL) 1952
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -59507.0 ( -144.43 by residue)
QMean score : 0.172
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: