Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQCGQVTQLMAPCMPYLSGA----PGM-------TPYGICCNSLGVLNQLAASTADRVAACNCVKAAASGFP-A----VDFSRAAALPAACGLAINFAVTPNMDCNQVTDEP
1S6D Chain:A ((19-97))
--------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM------------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47594 for 403 contacts (-118.1/contact) +
2D Compatibility (PS) -6557 + (NN) -1396 + (LL) 2212
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -58035.0 ( -144.01 by residue)
QMean score : 0.130
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: