Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GTSDLCGLAETAFGECTAYVAGG---EP------------AVSRRCCRALGDIRDLAATAAERRAVCACILSEMLAAG----DGRV----DSGRAAGLPAACNVRVG-FIPTSPNFNCFRVR
1SM7 Chain:A ((13-107))
----------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPFI---------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55542 for 491 contacts (-113.1/contact) +
2D Compatibility (PS) -7497 + (NN) -826 + (LL) 1500
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -66665.0 ( -135.77 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: