Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
CEVTQLAVC----ASAILGGTKPSGECCGNLRAQQGCFCQYVKDP-NYGHY--------VNSPHARETLQTCGIALPHC------------------------
1U78 Chain:A ((2-104))
PRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG
General information:
TITO was launched using:
RESULT:
Template:
1U78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22844 for 318 contacts (-71.8/contact) +
2D Compatibility (PS) -6337 + (NN) -1208 + (LL) 0
1D Compatibility (HY) -400 + (ID) 500
Total energy: -31289.0 ( -98.39 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_1U78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U78-query.scw
PDB file :
Tito_Scwrl_1U78.pdb
: