Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------GVVGVAGAGCNAGQLTVCTGAIAGGARP-----TAACCSSLRAQQGCFCQFAKDPRYG-----RYVNSPNARKAVSSCGIALPTCH-----------------------------------------------------
1KNG Chain:A ((50-193))
RPAPQTALPPLEGLQADNVQVPGLD---PAAFKG-KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKAL
General information:
TITO was launched using:
RESULT:
Template:
1KNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24060 for 405 contacts (-59.4/contact) +
2D Compatibility (PS) -7387 + (NN) 2175 + (LL) 444
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -33078.0 ( -81.67 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_1KNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KNG-query.scw
PDB file :
Tito_Scwrl_1KNG.pdb
: