Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APRGAHGAGECGKTPADKMALKLAPCASAGQDPKSAPSSGCCTAVHTIGK-QSPKCLCAVMLSDTAKSAGI-KPEVAMS-IPKRCNLVDRPVGYKCGAYTLP
1HYP Chain:? ((6-80))
--------PSCPD---------LSICLNILGG-SLGTVDDCCALIGGLGDIEAIVCLCIQLRA-----LGILNLNRNLQLILNSCG-RSYPSNATCPRT---
General information:
TITO was launched using:
RESULT:
Template:
1HYP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41740 for 469 contacts (-89.0/contact) +
2D Compatibility (PS) -7456 + (NN) -2959 + (LL) 1008
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -55497.0 ( -118.33 by residue)
QMean score : 0.123
(partial model without unconserved sides chains):
PDB file :
Tito_1HYP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYP-query.scw
PDB file :
Tito_Scwrl_1HYP.pdb
: