Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QNICPRVNRIVNPCVAYGL---GRAP--------------IAPCCRALNDLRFVDSRNLRRAACRCLVGVVNRNP--GL-R------RNNRFQNVPGDCRNNFVRPFWWRPRIQCNRVNLMDKLEYLDAEE
1SM7 Chain:A ((13-100))
--------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE-------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42223 for 396 contacts (-106.6/contact) +
2D Compatibility (PS) -6237 + (NN) -2376 + (LL) 3076
1D Compatibility (HY) 1200 + (ID) 550
Total energy: -47110.0 ( -118.96 by residue)
QMean score : 0.231
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: