Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCNDVTGNLTPCLPYLRS---GGK---P----------------TPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL---K-V-------RPDMASSLPGKCGISTSIPINPNVNCNTIP
1PSY Chain:A ((25-120))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMR----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17410 for 480 contacts (-36.3/contact) +
2D Compatibility (PS) -6421 + (NN) -2457 + (LL) 944
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -29244.0 ( -60.92 by residue)
QMean score : 0.258
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: