Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------VTCSAIQLSPCLGAITSNSAP-----STLCCSRIREQKPCLCTYLKNPTLR-----NYVNSPGAKKVARTCGVPYPKC------------------------------------------------------
1KNG Chain:A ((50-193))
RPAPQTALPPLEGLQADNVQVPGLDPAAFKG-KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKAL
General information:
TITO was launched using:
RESULT:
Template:
1KNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16023 for 357 contacts (-44.9/contact) +
2D Compatibility (PS) -6880 + (NN) 1540 + (LL) -28
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -24241.0 ( -67.90 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_1KNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KNG-query.scw
PDB file :
Tito_Scwrl_1KNG.pdb
: