Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--ATACDAAQLTP--CAGAII-GSSPP-----TAACCSRLREQQPCLCTYARD-PK--LQRYVSSPNGKNAMAACKVP-VPSC-----------------------------
1F9M Chain:A ((10-121))
MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18450 for 362 contacts (-51.0/contact) +
2D Compatibility (PS) -7492 + (NN) -2458 + (LL) 0
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -32000.0 ( -88.40 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: