Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCSDVIKDLRPCVNYLTSG---TG--K----------------PPSACCAGASALQSAASSTADKKAACECIKSASKSL---N-P-------NPQLAQALPANCGINLPYTISPSVDCSK
1PSY Chain:A ((25-121))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16852 for 489 contacts (-34.5/contact) +
2D Compatibility (PS) -6967 + (NN) -4560 + (LL) 1324
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -31055.0 ( -63.51 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: