Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTGCGQVVSALAPCIGYATGG----AAS-----PSARCCSGVRGLNSAASSPADRKTACTCLKQQTSGMG---G---------IR---------PDLVAGIPGKCGVNIPYAISPSTDCSKVR
1B1U Chain:A ((15-109))
---------NPLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--------PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIH------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34019 for 412 contacts (-82.6/contact) +
2D Compatibility (PS) -6399 + (NN) 1279 + (LL) 1244
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -40845.0 ( -99.14 by residue)
QMean score : 0.231
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: