Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSCPAVAQTLTPCLPHVSN---PGPSP----------PQPCCNRVKTLNSQAKTTQDRHHVCGCLKSLMAG-I------PG----LNLPAFASVAKDCGVDIGYIISPNTDCSK
2LVF Chain:A ((16-101))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28894 for 345 contacts (-83.8/contact) +
2D Compatibility (PS) -6424 + (NN) -2728 + (LL) 1168
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -41028.0 ( -118.92 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: