Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANEHLNLFSLENSDYIYADYNATFPVSDSVKESILEVLSKQVLNPSSLHRKGQEARRILQDARDNIRSAIGVPSNKEIVFTSGATEANSLVMKGIA------GFQHVI-SAVEHPSILNSACNPHIIPVNQGGIVDLL--------ALERILSELKGNRVIVSVMMANNETGVVQPVKEIAEIAHKFETIYHTDAAQSVGKIKVNMEDLGMDLLTLSAHKFGGIAGSGVLIFNK-------DLVIEPIIVGGGQEKGLRGGTENIVAIAGLSAALQSISNLLSKMD-EIKELRDQLEYELLNLAS-GIKIFGKNSKRLPNTSLIYMPGVKSDVQLMNFDLNNIAVSNGSACSSGKVEPSHVLLAMGATREQAECSIRVSIGPQTKPRDIRKIVDCWYNIYEKNILDMRK |
| 3VAX Chain:B ((22-378)) | ----------------TYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD-ELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLE--HL--AGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDL-TTPIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRL---LAGLASTSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPG-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VAX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158771 for 2766 contacts (-57.4/contact) +
2D Compatibility (PS) -36559 + (NN) -16457 + (LL) 3500
1D Compatibility (HY) -20000 + (ID) 5950
Total energy: -234237.0 ( -84.68 by residue)
QMean score : 0.467
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