Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MHKILILLLIILPIKLLAVEIEIIADVNGEPISNLDIEKRINLTHSLFGTQSIDKNELKLQILKQLIDEIIIINEAQRLNIKLSDEELSNAVVLFLTQSFKLKDNEVDQYAKEHNIGLNILKRQIECQLLWDKIIEVRIVPFINISDKEVNNAKGQIEKPDYLITFQEFIIPNQK---------------DADVYGIAEDLVEKLRNN-NN---DFIPEAPIKMRK-----VTVNLNQLKGNLKSILEGLKTGDIAGPVSSSEDYSIVKVIDKVQLDHAMLESTLKLKQIVVKDSESLLDNLKEQKVNCLNFDELADNFNLPNAKEFEIKMRDLNPDLQALFSKTSVNEIIESRENSTARLMMLCDIKNNVVDAEATKQQIYQQKIMTQSNLLLDNLRKNAAVSYQYS |
3TC5 Chain:A ((59-166)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------RCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE---------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TC5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -30222 for 550 contacts (-54.9/contact) +
2D Compatibility (PS) -8989 + (NN) -2725 + (LL) 25788
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -20248.0 ( -36.81 by residue)
QMean score : 0.557
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