Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARNYYEILEY---VAPEEINKAYKRLGLKCHPDKLLP----KKRKISRIVKKAINGAALSKLELEEMQSL
2DMX Chain:A ((8-68))
-MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLV-SEAYE--VLSDSKKRSLYDR
General information:
TITO was launched using:
RESULT:
Template:
2DMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15341 for 320 contacts (-47.9/contact) +
2D Compatibility (PS) -5564 + (NN) -3045 + (LL) 372
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -28228.0 ( -88.21 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_2DMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DMX-query.scw
PDB file :
Tito_Scwrl_2DMX.pdb
: