Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKGIITNIGTIINTTIRSNSDQIFHIK-A-QNLSSIHEGDSIACSGVCLTVVDIINDIFTVQISQETMKVSNLGAWKVGKKINLEQAMRLSDKIDGHLVHGHVDETAKILTINQNLGSHEIKLSCPQELIKFVAKKGSVTLDGVSLTVNSVIGREFTVNIIPYTWQNTTFQYNKVNDYLNLEVDMIARYLDQLIQYKYN
3DDY Chain:A ((1-183))
MFRGIVQGRGVIRSISKSED-SQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILGDMVYFDI-DQALGTTTFDGLKEGDQVNLEIHP---------GLTGNIKGTALVAAIEENDAGFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAKDVKVNVEILN--------------
General information:
TITO was launched using:
RESULT:
Template:
3DDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91743 for 1373 contacts (-66.8/contact) +
2D Compatibility (PS) -17716 + (NN) 4450 + (LL) 1896
1D Compatibility (HY) -10400 + (ID) 1850
Total energy: -115363.0 ( -84.02 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_3DDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DDY-query.scw
PDB file :
Tito_Scwrl_3DDY.pdb
: