Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKIIEIRAPKTLGGESITEGVIKIKKSIGEAIEVDDLIFEIETDKTALELTAEASGQITEFLVSEGDVISPDQLLAKLSVGEVKKEDKSENLAKRDAPSARKIMEENAISTESVKGTGMGSRITKADVIDHMRKAEQPTIKQYELPKSAASGERREERVK--MSKIRQVIAARLKASQNTAAILTTFNEIDMKNVIDLRAKYKE-TFEKKYGIKLGFMSFFIKAAVQALREIPEINAEI--SGDEIIYKRYYDIGVAVGTNKGLVVPAIRNADQMSFAEIELTLADLGKKAREGKLQVSEMEDATFTISNGGVYGSLLSTPIINPPQSGILGMHSIQNRP-FAVGNSIEIRPMMYIALSYDHRIIDGKGAVTFLVKIKNYIEDPNRLVLEV |
| 2II4 Chain:H ((29-261)) | --------------------------------------------------------------------------------------------------------------------------------------------------------GKDRTEPVKGFHKAMVKTMSAALKIPH-----FGYCDEVDLTELVKLREELKPIAFAR--GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2II4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121309 for 1707 contacts (-71.1/contact) +
2D Compatibility (PS) -24546 + (NN) -10154 + (LL) 11488
1D Compatibility (HY) -18000 + (ID) 3950
Total energy: -166471.0 ( -97.52 by residue)
QMean score : 0.455
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