Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAEGTGF-PHYILNYEEIFKKEVIESFAQ---TYIQ---GKTPIPCIKCNQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGEVKLCRGIDKSKDQSYFLFATTKEQLKLLRFPLGGF-------YKCNVRKLARYFSLPI---SEKPDSQDICFVSENY-SKTIAKL-------------------APQ-------SIQKGKIVDVNGKVLGE-HNGI-VNFTVGQRKGLGIA-YSEPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWLEQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKDEQVIGGGWICS |
| 1K92 Chain:A ((4-296)) | -----------LKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPD-------------EEDYDAIPRRAMEYGAENARLIDCRKQLVAEGI-AAIQCGAFHNTTGGLTYFNTTPLGRA-VTGTMLVAAMKEDGVNIWGDGSTYKGND---IERFYRYGL----------LTN--AELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRII---EAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1K92.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91078 for 1882 contacts (-48.4/contact) +
2D Compatibility (PS) -26035 + (NN) -5155 + (LL) 2784
1D Compatibility (HY) -400 + (ID) 2300
Total energy: -122184.0 ( -64.92 by residue)
QMean score : 0.341
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