Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSILDKLVILLLVSTLPFSSYSYQFRTKAKQAVVLDLASDLFIFEHNSDEKMSPSSMSKLMTLYVAFDYLKAGIIDMKDKFRVSRKAWERK------G-SSMFLKEGQSVSVKELLEGVTTVSGNDACITLAEGIAGSEENFVVEMNEVAQNLNLSDSYFVNSSGWPDKDHFMSAKDLVVLAKRIFTDFPEYYDLFSKQYLTYNDIIQKNKNLLLFH-DIGVDGLKTGYTNAGGYGIVISAKRNDRRIFAVVNGLNTEKERIEEAKRLIQYSFNHFNTKKIFAKDSVVEEINVLYGKERKVSATVANDVTITYNRNLRDKIKVRVEY-KDMIPAPIKKGQEVGKIFIEIPGIEQQTIPLYAVNDVQELNYVEKFFRILF |
| 3ITA Chain:A ((5-352)) | --------------------TVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWA-TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLIVMENVEEGG---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ITA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167026 for 2919 contacts (-57.2/contact) +
2D Compatibility (PS) -36517 + (NN) -11039 + (LL) 3404
1D Compatibility (HY) -21200 + (ID) 6000
Total energy: -238378.0 ( -81.66 by residue)
QMean score : 0.465
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