Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQATYASISLPGISSVEDVLEDARFGKLFILVDDENRENEGDLIVLAEKLKPEHVAFMVRYGTGIVFLAMTRLHMGRLGLEFMRRSNIDEKLTPHTAFTTSIDARYGIATGVSAHDRTHTILTAIDGKSTQDDIITPGHVFPIIANDGGVLARNGHTEASVEIAKLIGYNHAAVGCELVNDDGSMMRLPELLKFAEQHNIKLTTIDKLIRYIKKLS
3LRJ Chain:B ((11-208))
----------TP-FERVELALDALREGRGVMVLDD----NEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAY---GTGFTVTIEAAEGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAH-
General information:
TITO was launched using:
RESULT:
Template:
3LRJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132807 for 1627 contacts (-81.6/contact) +
2D Compatibility (PS) -20973 + (NN) -4347 + (LL) 1448
1D Compatibility (HY) -13600 + (ID) 4300
Total energy: -174579.0 ( -107.30 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_3LRJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LRJ-query.scw
PDB file :
Tito_Scwrl_3LRJ.pdb
: