Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSPCPRAKVCFSPGEDCAVLIISEIDQSKESVLVQEYTFTLETIARALINAKERSVDVEVILDKSQLHSKYSVINKLFSNGIPVWIDDKPKIAHNKVIIVDNQKVITGSFNLTKTAKK----GNAENLLIIKNYPELVQQYVKNWEIRKSQSYKYAS
3QPH Chain:A ((118-232))
---------------DEAIEMFRESLYSAKNEVIVVTPSEFFETIREDLIKTLERGVTVSLYIDKIPDL-----SEFKGKGNFFVRQF---YKLNHLIGMTDGKEVVTI-QNATFDSIGPPSFKSTYPEIIFSQ-YSLIIEIFKESTLEKEIIGNPKD
General information:
TITO was launched using:
RESULT:
Template:
3QPH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36602 for 771 contacts (-47.5/contact) +
2D Compatibility (PS) -11926 + (NN) -439 + (LL) 684
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -52983.0 ( -68.72 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_3QPH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QPH-query.scw
PDB file :
Tito_Scwrl_3QPH.pdb
: