Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSLLAIEKDSNLVKCHDQLLNEHQGKFRIVEADALYVVEEELIERPVKVIANLPYNISLALFLKWLNKIKLFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPKEFFPRPKVYSSVITVKPLPTQRFAVNLEALTKLTRAVFAQRRKMLRNSLQNVTNRTETALENAKLSGNERPKNLTVEQFCLLANNM
3FTD Chain:A ((7-243))
----------SFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIG---DERLEVINEDASKFPFCSL-GKELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQGK---KDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKF-PVKDLKNYKKFLTKIFQNRRKVLRKKIP------EELLKEAGINPDARVEQLSLEDFFKLYRLI
General information:
TITO was launched using:
RESULT:
Template:
3FTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145055 for 1925 contacts (-75.4/contact) +
2D Compatibility (PS) -25414 + (NN) -10832 + (LL) 1232
1D Compatibility (HY) -18000 + (ID) 3550
Total energy: -201619.0 ( -104.74 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_3FTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FTD-query.scw
PDB file :
Tito_Scwrl_3FTD.pdb
: