Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEQKQSKSVAI----WLFLCSIM--IVLMVGIGGFTRLSKAGLSITEWNPITGA------FPPLNERDWLQEKSKYETTPEYKTFNYGMSMEEFRTLYL--------IEYVHRLFARLTGLI---------------------------------------FILPFIYFTLKKRISKKVVIRLSIALSFGVLQAFTGWYMVKSGLVAKPHVSHYMLTLHLLLALVIFALLSY--QFFNYQVRQKQTKLKISGSTVHYVGIILILIVVQIIFG---AFVAGLNAGLIYNTFP------LMGGHIIPKDLFFLQPTWLNIFEN-RATVQFIHR----TLALLILVLTTVLTIKNASVKSVYVMLLSVIIQIILGVVTLLLHIPITIAISHQMFSFILFGSG---------LCFLCYLRKQN--------------------------------------------- |
| 5A1F Chain:A ((1-458)) | SMFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPP-PDWQPPFACDVDKLHFTPRIQR--LNELEAQTRVRDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDSPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIED-------HWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQ-LVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIEDEKALRETVRKLGV---IDSERMDFELLPDDERQCVKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCPPYKYKLRYRYTLDDLYPMMNALKLRAE |
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General information:
TITO was launched using:
| RESULT:
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Template: 5A1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -280923 for 2253 contacts (-124.7/contact) +
2D Compatibility (PS) -33158 + (NN) 3904 + (LL) 748
1D Compatibility (HY) -8000 + (ID) 2750
Total energy: -320179.0 ( -142.11 by residue)
QMean score : 0.187
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