Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIIKTIEEKIRGSIDVIDVDIIDESVKHADHYFSSSSMLPSHIKLVLISDNFAGMDSLKRHRLIYELLKSEIELIHAISLHLYTQSEYNLKNK
1V9J Chain:A ((30-111))
-LSADYLREKLRQDLEAEHVEVEDTTLN----------RCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFEQKTLTPEQWTRQRR
General information:
TITO was launched using:
RESULT:
Template:
1V9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64457 for 544 contacts (-118.5/contact) +
2D Compatibility (PS) -8623 + (NN) -317 + (LL) 476
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -78321.0 ( -143.97 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_1V9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9J-query.scw
PDB file :
Tito_Scwrl_1V9J.pdb
: