Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSVTFILPDGSKKSYEAAEGETLLNLAHRSDPDLLE-GACEGSLACSTCHVIIDQNFYDAVETHNPISDEENDMLDLAFSLTETSRLGCQIKITKDIDGLCVTIPKGTRNISLDKQGND
3P1M Chain:D ((9-110))
--TVHFINRDGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLD---AITDEENDMLDLAYGLTDRSRLGCQICLTKSMDNMTVRVPETVADARQSIDVGK
General information:
TITO was launched using:
RESULT:
Template:
3P1M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63577 for 718 contacts (-88.5/contact) +
2D Compatibility (PS) -11417 + (NN) -6105 + (LL) 84
1D Compatibility (HY) -10800 + (ID) 2400
Total energy: -94215.0 ( -131.22 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_3P1M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P1M-query.scw
PDB file :
Tito_Scwrl_3P1M.pdb
: