Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKAVVLLNLGGPDSLSAVRPFLFNLFYDKRIINLPNPFRFFLAKFISAKRENNARKIYEQIGGKSPILENTKMQAEALERELNRSVFCHPSSVTLGPRKENWIPVSRIGMTSKLTKVFICMRYWHPFANEVVKSVKQFDPDEVILLPLYPQYSTTTTLSSIENWQKNAKQYGIKCNTK--IIRHHYDNQDFIEAHANLITK---HYKLA--SEVGKPRVLFSAHSLPLSVIKKGDPYALQVEETVKLIVKKLHIKDLDWSICYQSKIGPVKWLEPSTESELLRAKADGVP-VVLLPISFVSEHSETLVELDMEYKTIIKDGYYF----RIPTLSTNSLFIKCLAGLCINHS |
| 2QD1 Chain:C ((4-324)) | -KTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP--IQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDE----------LSP---NTAP----------HKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEV---VILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCN-PYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIKTLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2QD1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147330 for 2554 contacts (-57.7/contact) +
2D Compatibility (PS) -33787 + (NN) -20855 + (LL) 1396
1D Compatibility (HY) -25600 + (ID) 5850
Total energy: -232026.0 ( -90.85 by residue)
QMean score : 0.559
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