Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVNHKNVKKMIKAIAKRTLINKMRKSKTRTAIRKLVDIIKSGNKENVTPAFRSAESNLHKCVSKGVIHKNTAARKISRLNAKVKALMTA
2YKR Chain:T ((2-85))
--NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA--
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7001 for 547 contacts (-12.8/contact) +
2D Compatibility (PS) -8504 + (NN) 3387 + (LL) 660
1D Compatibility (HY) 400 + (ID) 1450
Total energy: -12508.0 ( -22.87 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: